Datasets

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Akiyama, Y., Morioka, S., Tsuzuki, S., Yoshikawa, T., Yamato, M., Nakamura, H., Shimojima, M., Takakusaki, M., Saito, S., Takahashi, K., Sanada, M., Komatsubara, M., Takebuchi, K., Yamaguchi, E., Suzuki, T., Shimokawa, K., Kurosu, T., Kawahara, M., Oishi, K., et al. (2024). Efficacy and viral dynamics of tecovirimat in patients with MPOX: A multicenter open-label, double-arm trial in Japan. Journal of Infection and Chemotherapy, 30(6), 488–493. https://doi.org/10.1016/j.jiac.2023.11.025

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset akiyama2024efficacy.

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Allan‐Blitz, L.-T., Carragher, K., Sukhija‐Cohen, A., Ritchie, P., Scott, H., Li, H., & Klausner, J. D. (2022). Laboratory validation and clinical performance of a saliva‐based test for monkeypox virus. Journal of Medical Virology, 95(1). Portico. https://doi.org/10.1002/jmv.28191

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset allanblitz2023laboratory.

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Alsharrah, D., Alhaddad, F., Alyaseen, M., Aljamaan, S., Almutairi, N., Ayed, M., Papenburg, J., & Alghounaim, M. (2020). Clinical characteristics of pediatric SARS‐CoV‐2 infection and coronavirus disease 2019 (COVID‐19) in Kuwait. Journal of Medical Virology, 93(5), 3246–3250. Portico. https://doi.org/10.1002/jmv.26684

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset alsharrah2020clinical.

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Anfruns-Estrada, E., Sabrià, A., Fuentes, C., Sabaté, S., Razquin, E., Cornejo, T., Bartolomé, R., Torner, N., Izquierdo, C., Soldevila, N., Coronas, L., Dominguez, A., Pintó, R., Bosch, A., Guix, S., & . (2020). Detection of Norovirus in Saliva Samples from Acute Gastroenteritis Cases and Asymptomatic Subjects: Association with Age and Higher Shedding in Stool. Viruses, 12(12), 1369. https://doi.org/10.3390/v12121369

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset anfrunsestrada2020detection.

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Antinori, A., Mazzotta, V., Vita, S., Carletti, F., Tacconi, D., Lapini, L. E., D’Abramo, A., Cicalini, S., Lapa, D., Pittalis, S., Puro, V., Rivano Capparuccia, M., Giombini, E., Gruber, C. E. M., Garbuglia, A. R., Marani, A., Vairo, F., Girardi, E., Vaia, F., et al. (2022). Epidemiological, clinical and virological characteristics of four cases of monkeypox support transmission through sexual contact, Italy, May 2022. Eurosurveillance, 27(22). https://doi.org/10.2807/1560-7917.es.2022.27.22.2200421

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset antinori2022epidemiological.

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Aoki, Y., Suto, A., Mizuta, K., Ahiko, T., Osaka, K., & Matsuzaki, Y. (2010). Duration of norovirus excretion and the longitudinal course of viral load in norovirus-infected elderly patients. Journal of Hospital Infection, 75(1), 42–46. https://doi.org/10.1016/j.jhin.2009.12.016

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset aoki2010duration.

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Arts, P. J., Kelly, J. D., Midgley, C. M., Anglin, K., Lu, S., Abedi, G. R., Andino, R., Bakker, K. M., Banman, B., Boehm, A. B., Briggs-Hagen, M., Brouwer, A. F., Davidson, M. C., Eisenberg, M. C., Garcia-Knight, M., Knight, S., Peluso, M. J., Pineda-Ramirez, J., Diaz Sanchez, R., et al. (2023). Longitudinal and quantitative fecal shedding dynamics of SARS-CoV-2, pepper mild mottle virus, and crAssphage. mSphere, 8(4). https://doi.org/10.1128/msphere.00132-23

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset arts2023longitudinal.

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Atmar, R. L., Opekun, A. R., Gilger, M. A., Estes, M. K., Crawford, S. E., Neill, F. H., & Graham, D. Y. (2008). Norwalk Virus Shedding after Experimental Human Infection. Emerging Infectious Diseases, 14(10), 1553–1557. https://doi.org/10.3201/eid1410.080117

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset atmar2008norwalk.

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Baier, C., Linderkamp, C., Beilken, A., Thol, F., Heuser, M., Ebadi, E., Ganzenmueller, T., Heim, A., & Bange, F.-C. (2018). Influenza and respiratory syncytial virus screening for the detection of asymptomatically infected patients in hematology and oncology. GMS Hygiene and Infection Control; 13:Doc08. https://doi.org/10.3205/DGKH000314

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset baier2018influenza.

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Berciaud, S., Rayne, F., Kassab, S., Jubert, C., Faure-Della Corte, M., Salin, F., Wodrich, H., & Lafon, M. E. (2012). Adenovirus infections in Bordeaux University Hospital 2008–2010: Clinical and virological features. Journal of Clinical Virology, 54(4), 302–307. https://doi.org/10.1016/j.jcv.2012.04.009

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset berciaud2012adenovirus.

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Biel, S. S., Held, T. K., Landt, O., Niedrig, M., Gelderblom, H. R., Siegert, W., & Nitsche, A. (2000). Rapid Quantification and Differentiation of Human Polyomavirus DNA in Undiluted Urine from Patients after Bone Marrow Transplantation. Journal of Clinical Microbiology, 38(10), 3689–3695. https://doi.org/10.1128/jcm.38.10.3689-3695.2000

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset biel2000rapid.

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Brieu, N., Guyon, G., Rodière, M., Segondy, M., & Foulongne, V. (2008). Human Bocavirus Infection in Children With Respiratory Tract Disease. Pediatric Infectious Disease Journal, 27(11), 969–973. https://doi.org/10.1097/inf.0b013e31817acfaa

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset brieu2008human.

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Brint, M. E., Hughes, J. M., Shah, A., Miller, C. R., Harrison, L. G., Meals, E. A., Blanch, J., Thompson, C. R., Cormier, S. A., & DeVincenzo, J. P. (2017). Prolonged viral replication and longitudinal viral dynamic differences among respiratory syncytial virus infected infants. Pediatric Research, 82(5), 872–880. https://doi.org/10.1038/pr.2017.173

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset brint2017prolonged.

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Brosius, I., Van Dijck, C., Coppens, J., Vandenhove, L., Bangwen, E., Vanroye, F., Verschueren, J., Zange, S., Bugert, J., Michiels, J., Bottieau, E., Soentjens, P., van Griensven, J., Kenyon, C., Ariën, K. K., Van Esbroeck, M., Vercauteren, K., & Liesenborghs, L. (2023). Presymptomatic viral shedding in high‐risk mpox contacts: A prospective cohort study. Journal of Medical Virology, 95(5). Portico. https://doi.org/10.1002/jmv.28769

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset brosius2023presymptomatic.

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Cantelli, C. P., Velloso, A. J., Assis, R. M. S. d., Barros, J. J., Mello, F. C. d. A., Cunha, D. C. d., Brasil, P., Nordgren, J., Svensson, L., Miagostovich, M. P., Leite, J. P. G., & Moraes, M. T. B. d. (2020). Rotavirus A shedding and HBGA host genetic susceptibility in a birth community-cohort, Rio de Janeiro, Brazil, 2014–2018. Scientific Reports, 10(1). https://doi.org/10.1038/s41598-020-64025-0

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset cantelli2020rotavirus.

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Carr, M. J., Waters, A., Fenwick, F., Toms, G. L., Hall, W. W., & O’Kelly, E. (2008). Molecular epidemiology of human metapneumovirus in Ireland. Journal of Medical Virology, 80(3), 510–516. Portico. https://doi.org/10.1002/jmv.21081

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset carr2008molecular.

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Centers for Disease Control and Prevention (CDC) Nursing Home Public Health Response Network (NHPHRN). Cite the source directly: https://github.com/YWAN446/cdc2024nhphrn/tree/main

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset cdc2024nhphrn.

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Chen, K.-H., Liu, W.-D., Weng, K.-C., Chen, H.-H., Ho, S.-Y., Huang, Y.-S., Wu, T.-Y., Li, G.-C., Chang, S.-Y., & Hung, C.-C. (2024). Clinical manifestations and viral kinetics of people with Mpox: A case series during the 2023 outbreak in Taiwan. Journal of Microbiology, Immunology and Infection, 57(6), 961–965. https://doi.org/10.1016/j.jmii.2024.08.008

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset chen2024clinical.

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Cheng, W.-x., Jin, Y., Duan, Z.-j., Xu, Z.-q., Qi, H.-m., Zhang, Q., Yu, J.-m., Zhu, L., Jin, M., Liu, N., Cui, S.-x., Li, H.-y., & Fang, Z.-y. (2008). Human Bocavirus in Children Hospitalized for Acute Gastroenteritis: A Case‐Control Study. Clinical Infectious Diseases, 47(2), 161–167. https://doi.org/10.1086/589244

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset cheng2008human.

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Chilengi, R., Simuyandi, M., Chibuye, M., Chirwa, M., Sukwa, N., Laban, N., Chisenga, C., Silwamba, S., Grassly, N., & Bosomprah, S. (2020). A pilot study on use of live attenuated rotavirus vaccine (Rotarix™) as an infection challenge model. Vaccine, 38(46), 7357–7362. https://doi.org/10.1016/j.vaccine.2020.09.023

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset chilengi2020pilot.

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Choi, J.-H., Chung, Y.-S., Kim, K.-S., Lee, W.-J., Chung, I. Y., Oh, H.-B., & Kang, C. (2008). Development of real-time PCR assays for detection and quantification of human bocavirus. Journal of Clinical Virology, 42(3), 249–253. https://doi.org/10.1016/j.jcv.2008.02.010

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset choi2008development.

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Colavita, F., Mazzotta, V., Rozera, G., Abbate, I., Carletti, F., Pinnetti, C., Matusali, G., Meschi, S., Mondi, A., Lapa, D., Vita, S., Minosse, C., Aguglia, C., Gagliardini, R., Specchiarello, E., Bettini, A., Nicastri, E., Girardi, E., Vaia, F., et al. (2023). Kinetics of viral DNA in body fluids and antibody response in patients with acute Monkeypox virus infection. iScience, 26(3), 106102. https://doi.org/10.1016/j.isci.2023.106102

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset colavita2023kinetics.

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Coppée, R., Chenane, H. R., Bridier-Nahmias, A., Tcherakian, C., Catherinot, E., Collin, G., Lebourgeois, S., Visseaux, B., Descamps, D., Vasse, M., & Farfour, E. (2023). Temporal dynamics of RSV shedding and genetic diversity in adults during the COVID-19 pandemic in a French hospital, early 2021. Virus Research, 323, 198950. https://doi.org/10.1016/j.virusres.2022.198950

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset coppee2023temporal.

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Coppens, J., Vanroye, F., Brosius, I., Liesenborghs, L., van Henten, S., Vanbaelen, T., Bracke, S., Berens-Riha, N., De Baetselier, I., Kenyon, C., Soentjens, P., Florence, E., Van Griensven, J., Ariën, K. K., Jacobs, B. K. M., Van den Bossche, D., Van Esbroeck, M., Vercauteren, K., Van Dijck, C., et al. (2023). Alternative sampling specimens for the molecular detection of mpox (formerly monkeypox) virus. Journal of Clinical Virology, 159, 105372. https://doi.org/10.1016/j.jcv.2022.105372

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset coppens2023alternative.

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(Ed.). (2020). Clinical and virologic characteristics of the first 12 patients with coronavirus disease 2019 (COVID-19) in the United States. Nature Medicine, 26(6), 861–868. https://doi.org/10.1038/s41591-020-0877-5

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset covid2020clinical.

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Cowley, D., Boniface, K., Bogdanovic-Sakran, N., Kirkwood, C. D., & Bines, J. E. (2017). Rotavirus shedding following administration of RV3-BB human neonatal rotavirus vaccine. Human Vaccines &Amp; Immunotherapeutics, 13(8), 1908–1915. https://doi.org/10.1080/21645515.2017.1323591

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset cowley2017rotavirus.

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de Jong, M. D., Simmons, C. P., Thanh, T. T., Hien, V. M., Smith, G. J. D., Chau, T. N. B., Hoang, D. M., Van Vinh Chau, N., Khanh, T. H., Dong, V. C., Qui, P. T., Van Cam, B., Ha, D. Q., Guan, Y., Peiris, J. S. M., Chinh, N. T., Hien, T. T., & Farrar, J. (2006). Fatal outcome of human influenza A (H5N1) is associated with high viral load and hypercytokinemia. Nature Medicine, 12(10), 1203–1207. https://doi.org/10.1038/nm1477

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset de2006fatal.

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De Baetselier, I., Van Dijck, C., Kenyon, C., Coppens, J., Michiels, J., de Block, T., Smet, H., Coppens, S., Vanroye, F., Bugert, J. J., Girl, P., Zange, S., Liesenborghs, L., Brosius, I., van Griensven, J., Selhorst, P., Florence, E., Van den Bossche, D., Ariën, K. K., et al. (2022). Retrospective detection of asymptomatic monkeypox virus infections among male sexual health clinic attendees in Belgium. Nature Medicine, 28(11), 2288–2292. https://doi.org/10.1038/s41591-022-02004-w

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset de2022retrospective.

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DeVincenzo, J., Cass, L., Murray, A., Woodward, K., Meals, E., Coates, M., Daly, L., Wheeler, V., Mori, J., Brindley, C., Davis, A., McCurdy, M., Ito, K., Murray, B., Strong, P., & Rapeport, G. (2020). Safety and Antiviral Effects of Nebulized PC786 in a Respiratory Syncytial Virus Challenge Study. The Journal of Infectious Diseases, 225(12), 2087–2096. https://doi.org/10.1093/infdis/jiaa716

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset devincenzo2022safety.

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El Saleeby, C. M., Bush, A. J., Harrison, L. M., Aitken, J. A., & DeVincenzo, J. P. (2011). Respiratory Syncytial Virus Load, Viral Dynamics, and Disease Severity in Previously Healthy Naturally Infected Children. The Journal of Infectious Diseases, 204(7), 996–1002. https://doi.org/10.1093/infdis/jir494

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset el2011respiratory.

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Engelmann, G., Heim, A., Greil, J., Schmitt, C. P., Flechtenmacher, C., Daum, E., Küsters, U., Schmidt, J., Meyburg, J., & Schnitzler, P. (2009). Adenovirus infection and treatment with cidofovir in children after liver transplantation. Pediatric Transplantation, 13(4), 421–428. Portico. https://doi.org/10.1111/j.1399-3046.2008.01014.x

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset engelmann2009adenovirus.

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Enya et al. (2023). Similarities in rotavirus vaccine viral shedding and immune responses in pairs of twins. Fujita Medical Journal. https://doi.org/10.20407/fmj.2022-039

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset enya2023similarities.

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Fajnzylber, J., Regan, J., Coxen, K., Corry, H., Wong, C., Rosenthal, A., Worrall, D., Giguel, F., Piechocka-Trocha, A., Atyeo, C., Fischinger, S., Chan, A., Flaherty, K. T., Hall, K., Dougan, M., Ryan, E. T., Gillespie, E., Chishti, R., Li, Y., et al. (2020). SARS-CoV-2 viral load is associated with increased disease severity and mortality. Nature Communications, 11(1). https://doi.org/10.1038/s41467-020-19057-5

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset fajnzylber2020sars.

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Falsey, A. R., Formica, M. A., Treanor, J. J., & Walsh, E. E. (2003). Comparison of Quantitative Reverse Transcription-PCR to Viral Culture for Assessment of Respiratory Syncytial Virus Shedding. Journal of Clinical Microbiology, 41(9), 4160–4165. https://doi.org/10.1128/jcm.41.9.4160-4165.2003

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset falsey2003comparison.

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Flitter, B. A., Gillard, J., Greco, S. N., Apkarian, M. D., D’Amato, N. P., Nguyen, L. Q., Neuhaus, E. D., Hailey, D. C. M., Pasetti, M. F., Shriver, M., Quigley, C., Frenck, R. W., Lindesmith, L. C., Baric, R. S., Wei, L.-J., Tucker, S. N., & Cummings, J. F. (2025). An oral norovirus vaccine generates mucosal immunity and reduces viral shedding in a phase 2 placebo-controlled challenge study. Science Translational Medicine, 17(798). https://doi.org/10.1126/scitranslmed.adh9906

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset flitter2025oral.

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Fraaij, P. L., Schutten, M., Javouhey, E., Burleigh, L., Outlaw, R., Kumar, D., & Boucher, C. A. (2014). Viral Shedding and Susceptibility to Oseltamivir in Hospitalized Immunocompromised Patients with Influenza in the Influenza Resistance Information Study (IRIS). Antiviral Therapy, 20(6), 633–642. https://doi.org/10.3851/imp2957

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset fraaij2015viral.

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Funk, G. A., Gosert, R., & Hirsch, H. H. (2007). Viral dynamics in transplant patients: implications for disease. The Lancet Infectious Diseases, 7(7), 460–472. https://doi.org/10.1016/s1473-3099(07)70159-7

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset funk2007viral.

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Garcia-Knight, M., Anglin, K., Tassetto, M., Lu, S., Zhang, A., Goldberg, S. A., Catching, A., Davidson, M. C., Shak, J. R., Romero, M., Pineda-Ramirez, J., Diaz-Sanchez, R., Rugart, P., Donohue, K., Massachi, J., Sans, H. M., Djomaleu, M., Mathur, S., Servellita, V., et al. (2022). Infectious viral shedding of SARS-CoV-2 Delta following vaccination: A longitudinal cohort study. PLOS Pathogens, 18(9), e1010802. https://doi.org/10.1371/journal.ppat.1010802

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset garciaknight2022infectious.

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Gaspari, V., Rossini, G., Robuffo, S., Rapparini, L., Scagliarini, A., Mistral De Pascali, A., Piraccini, B. M., & Lazzarotto, T. (2023). Monkeypox Outbreak 2022: Clinical and Virological Features of 30 Patients at the Sexually Transmitted Diseases Centre of Sant’ Orsola Hospital, Bologna, Northeastern Italy. Journal of Clinical Microbiology, 61(1). https://doi.org/10.1128/jcm.01365-22

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset gaspari2023monkeypox.

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Gautret, P., Lagier, J.-C., Parola, P., Hoang, V. T., Meddeb, L., Mailhe, M., Doudier, B., Courjon, J., Giordanengo, V., Vieira, V. E., Tissot Dupont, H., Honoré, S., Colson, P., Chabrière, E., La Scola, B., Rolain, J.-M., Brouqui, P., & Raoult, D. (2020). RETRACTED: Hydroxychloroquine and azithromycin as a treatment of COVID-19: results of an open-label non-randomized clinical trial. International Journal of Antimicrobial Agents, 56(1), 105949. https://doi.org/10.1016/j.ijantimicag.2020.105949

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset gautret2020hydroxychloroquine.

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Ge, Y., Billings, W. Z., Opekun, A., Estes, M., Graham, D., Leon, J., Koelle, K., Shen, Y., Atmar, R., Lopman, B., & Handel, A. (2023). Effect of Norovirus Inoculum Dose on Virus Kinetics, Shedding, and Symptoms. Emerging Infectious Diseases, 29(7). https://doi.org/10.3201/eid2907.230117

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset ge2023effect.

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The human bocavirus role in acute respiratory tract infections of pediatric patients as defined by viral load quantification. Cite the source directly: https://pubmed.ncbi.nlm.nih.gov/18080673/

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset gerna2007human.

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Gerna, G., Sarasini, A., Percivalle, E., Campanini, G., Rovida, F., Marchi, A., & Baldanti, F. (2007). Prospective study of human metapneumovirus infection: Diagnosis, typing and virus quantification in nasopharyngeal secretions from pediatric patients. Journal of Clinical Virology, 40(3), 236–240. https://doi.org/10.1016/j.jcv.2007.08.001

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset gerna2007prospective.

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Golan- Tripto, I., Danino, D., De Waal, L., Akel, K., Dizitzer- Hillel, Y., Tal, A., Langman, Y., & Goldbart, A. (2024). Viral load in hospitalized infants with respiratory syncytial virus bronchiolitis: a three-way comparative analysis. European Journal of Pediatrics, 183(8), 3471–3478. https://doi.org/10.1007/s00431-024-05614-3

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset golantripto2024viral.

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Gutierrez, M. B., de Figueiredo, M. R., Fialho, A. M., Cantelli, C. P., Miagostovich, M. P., & Fumian, T. M. (2021). Nosocomial acute gastroenteritis outbreak caused by an equine-like G3P[8] DS-1-like rotavirus and GII.4 Sydney[P16] norovirus at a pediatric hospital in Rio de Janeiro, Brazil, 2019. Human Vaccines &Amp; Immunotherapeutics, 17(11), 4654–4660. https://doi.org/10.1080/21645515.2021.1963169

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset gutierrez2021nosocomial.

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Hakki, S., Zhou, J., Jonnerby, J., Singanayagam, A., Barnett, J. L., Madon, K. J., Koycheva, A., Kelly, C., Houston, H., Nevin, S., Fenn, J., Kundu, R., Crone, M. A., Pillay, T. D., Ahmad, S., Derqui-Fernandez, N., Conibear, E., Freemont, P. S., Taylor, G. P., et al. (2022). Onset and window of SARS-CoV-2 infectiousness and temporal correlation with symptom onset: a prospective, longitudinal, community cohort study. The Lancet Respiratory Medicine, 10(11), 1061–1073. https://doi.org/10.1016/s2213-2600(22)00226-0

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset hakki2022onset.

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Han, M. S., Seong, M.-W., Heo, E. Y., Park, J. H., Kim, N., Shin, S., Cho, S. I., Park, S. S., & Choi, E. H. (2020). Sequential Analysis of Viral Load in a Neonate and Her Mother Infected With Severe Acute Respiratory Syndrome Coronavirus 2. Clinical Infectious Diseases, 71(16), 2236–2239. https://doi.org/10.1093/cid/ciaa447

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset han2020sequential.

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Hanaoka, N., Ito, S., Konagaya, M., Nojiri, N., Yasuda, M., Fujimoto, T., & Deguchi, T. (2019). Infectious human adenoviruses are shed in urine even after disappearance of urethral symptoms. Plos One, 14(3), e0212434. https://doi.org/10.1371/journal.pone.0212434

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset hanaoka2019infectious.

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Hernaez, B., Muñoz-Gómez, A., Sanchiz, A., Orviz, E., Valls-Carbo, A., Sagastagoitia, I., Ayerdi, O., Martín, R., Puerta, T., Vera, M., Cabello, N., Vergas, J., Prieto, C., Pardo-Figuerez, M., Negredo, A., Lagarón, J. M., del Romero, J., Estrada, V., & Alcamí, A. (2023). Monitoring monkeypox virus in saliva and air samples in Spain: a cross-sectional study. The Lancet Microbe, 4(1), e21–e28. https://doi.org/10.1016/s2666-5247(22)00291-9

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset hernaez2023monitoring.

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Hiramatsu, H., Suzuki, R., Nagatani, A., Boda, H., Miyata, M., Hattori, F., Miura, H., Sugata, K., Yamada, S., Komoto, S., Taniguchi, K., Ihira, M., Nishimura, N., Ozaki, T., & Yoshikawa, T. (2017). Rotavirus Vaccination Can Be Performed Without Viral Dissemination in the Neonatal Intensive Care Unit. The Journal of Infectious Diseases, 217(4), 589–596. https://doi.org/10.1093/infdis/jix590

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset hiramatsu2018rotavirus.

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Hu, Y., Lu, S., Song, Z., Wang, W., Hao, P., Li, J., Zhang, X., Yen, H.-L., Shi, B., Li, T., Guan, W., Xu, L., Liu, Y., Wang, S., Zhang, X., Tian, D., Zhu, Z., He, J., Huang, K., et al. (2013). Association between adverse clinical outcome in human disease caused by novel influenza A H7N9 virus and sustained viral shedding and emergence of antiviral resistance. The Lancet, 381(9885), 2273–2279. https://doi.org/10.1016/s0140-6736(13)61125-3

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset hu2013association.

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Huh, K., Kim, I., Jung, J., Lee, J. E., Jhun, B. W., Gu, S. H., Song, D. H., Lee, E. Y., Jeong, H. J., & Yoo, H. (2019). Prolonged shedding of type 55 human adenovirus in immunocompetent adults with adenoviral respiratory infections. European Journal of Clinical Microbiology &Amp; Infectious Diseases, 38(4), 793–800. https://doi.org/10.1007/s10096-019-03471-9

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset huh2019prolonged.

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Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset iwakiri2009quantitative.

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Jacobsen, S., Niendorf, S., Lorenz, R., Bock, C.-T., & Mas Marques, A. (2022). Differentiation between Wild-Type Group A Rotaviruses and Vaccine Strains in Cases of Suspected Horizontal Transmission and Adverse Events Following Vaccination. Viruses, 14(8), 1670. https://doi.org/10.3390/v14081670

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset jacobsen2022differentiation.

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Jones, T. C., Biele, G., Mühlemann, B., Veith, T., Schneider, J., Beheim-Schwarzbach, J., Bleicker, T., Tesch, J., Schmidt, M. L., Sander, L. E., Kurth, F., Menzel, P., Schwarzer, R., Zuchowski, M., Hofmann, J., Krumbholz, A., Stein, A., Edelmann, A., Corman, V. M., & Drosten, C. (2021). Estimating infectiousness throughout SARS-CoV-2 infection course. Science, 373(6551). https://doi.org/10.1126/science.abi5273

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset jones2021estimating.

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Kamel, A. H., Ali, M. A., El-Nady, H. G., Deraz, A., Aho, S., Pothier, P., & Belliot, G. (2011). Presence of enteric hepatitis viruses in the sewage and population of Greater Cairo. Clinical Microbiology and Infection, 17(8), 1182–1185. https://doi.org/10.1111/j.1469-0691.2011.03461.x

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kamel2011presence.

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Kantola, K., Sadeghi, M., Antikainen, J., Kirveskari, J., Delwart, E., Hedman, K., & Söderlund-Venermo, M. (2010). Real-Time Quantitative PCR Detection of Four Human Bocaviruses. Journal of Clinical Microbiology, 48(11), 4044–4050. https://doi.org/10.1128/jcm.00686-10

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kantola2010real.

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Kay, M., Zerr, D. M., Englund, J. A., Cadwell, B. L., Kuypers, J., Swenson, P., Kwan-Gett, T. S., Bell, S. L., & Duchin, J. S. (2011). Shedding of Pandemic (H1N1) 2009 Virus among Health Care Personnel, Seattle, Washington, USA. Emerging Infectious Diseases, 17(4), 639–644. https://doi.org/10.3201/eid1704.100866

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kay2011shedding.

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Ke, R., Martinez, P. P., Smith, R. L., Gibson, L. L., Mirza, A., Conte, M., Gallagher, N., Luo, C. H., Jarrett, J., Zhou, R., Conte, A., Liu, T., Farjo, M., Walden, K. K. O., Rendon, G., Fields, C. J., Wang, L., Fredrickson, R., Edmonson, D. C., et al. (2022). Daily longitudinal sampling of SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness. Nature Microbiology, 7(5), 640–652. https://doi.org/10.1038/s41564-022-01105-z

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset ke2022daily.

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Kim, J. Y., Ko, J.-H., Kim, Y., Kim, Y.-J., Kim, J.-M., Chung, Y.-S., Kim, H. M., Han, M.-G., Kim, S. Y., & Chin, B. S. (2020). Viral Load Kinetics of SARS-CoV-2 Infection in First Two Patients in Korea. Journal of Korean Medical Science, 35(7). https://doi.org/10.3346/jkms.2020.35.e86

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kim2020viral.

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Kim, S. E., Jeong, H. S., Yu, Y., Shin, S. U., Kim, S., Oh, T. H., Kim, U. J., Kang, S.-J., Jang, H.-C., Jung, S.-I., & Park, K.-H. (2020). Viral kinetics of SARS-CoV-2 in asymptomatic carriers and presymptomatic patients. International Journal of Infectious Diseases, 95, 441–443. https://doi.org/10.1016/j.ijid.2020.04.083

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kimse2020viral.

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Kirby, A. E., Shi, J., Montes, J., Lichtenstein, M., & Moe, C. L. (2014). Disease course and viral shedding in experimental Norwalk virus and Snow Mountain virus infection. Journal of Medical Virology, 86(12), 2055–2064. Portico. https://doi.org/10.1002/jmv.23905

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kirby2014disease.

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Kirby, A. E., Streby, A., & Moe, C. L. (2016). Vomiting as a Symptom and Transmission Risk in Norovirus Illness: Evidence from Human Challenge Studies. Plos One, 11(4), e0143759. https://doi.org/10.1371/journal.pone.0143759

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kirby2016vomiting.

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Kissler, S. M., Fauver, J. R., Mack, C., Tai, C. G., Breban, M. I., Watkins, A. E., Samant, R. M., Anderson, D. J., Metti, J., Khullar, G., Baits, R., MacKay, M., Salgado, D., Baker, T., Dudley, J. T., Mason, C. E., Ho, D. D., Grubaugh, N. D., & Grad, Y. H. (2021). Viral dynamics of SARS-CoV-2 variants in vaccinated and unvaccinated individuals. https://doi.org/10.1101/2021.02.16.21251535

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kissler2021densely.

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Kissler, S. M., Fauver, J. R., Mack, C., Olesen, S. W., Tai, C., Shiue, K. Y., Kalinich, C. C., Jednak, S., Ott, I. M., Vogels, C. B. F., Wohlgemuth, J., Weisberger, J., DiFiori, J., Anderson, D. J., Mancell, J., Ho, D. D., Grubaugh, N. D., & Grad, Y. H. (2021). Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies. PLOS Biology, 19(7), e3001333. https://doi.org/10.1371/journal.pbio.3001333

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kissler2021viral.

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Kondo, H., Shobugawa, Y., Hibino, A., Yagami, R., Dapat, C., Okazaki, M., Otsuka, T., Fujii, K., Hassan, M. R., & Saito, R. (2016). Influenza Virus Shedding in Laninamivir-Treated Children upon Returning to School. The Tohoku Journal of Experimental Medicine, 238(2), 113–121. https://doi.org/10.1620/tjem.238.113

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kondo2016influenza.

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Kutter, J. S., de Meulder, D., Bestebroer, T. M., van Kampen, J. J. A., Molenkamp, R., Fouchier, R. A. M., Wishaupt, J. O., Fraaij, P. L. A., & Herfst, S. (2021). Small quantities of respiratory syncytial virus RNA only in large droplets around infants hospitalized with acute respiratory infections. Antimicrobial Resistance &Amp; Infection Control, 10(1). https://doi.org/10.1186/s13756-021-00968-x

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset kutter2021small.

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Lapa, D., Carletti, F., Mazzotta, V., Matusali, G., Pinnetti, C., Meschi, S., Gagliardini, R., Colavita, F., Mondi, A., Minosse, C., Scorzolini, L., Cicalini, S., Maffongelli, G., Specchiarello, E., Camici, M., Bettini, A., Baldini, F., Francalancia, M., Mizzoni, K., et al. (2022). Monkeypox virus isolation from a semen sample collected in the early phase of infection in a patient with prolonged seminal viral shedding. The Lancet Infectious Diseases, 22(9), 1267–1269. https://doi.org/10.1016/s1473-3099(22)00513-8

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset lapa2022monkeypox.

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Lavezzo, E., Franchin, E., Ciavarella, C., Cuomo-Dannenburg, G., Barzon, L., Del Vecchio, C., Rossi, L., Manganelli, R., Loregian, A., Navarin, N., Abate, D., Sciro, M., Merigliano, S., De Canale, E., Vanuzzo, M. C., Besutti, V., Saluzzo, F., Onelia, F., Pacenti, M., et al. (2020). Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’. Nature, 584(7821), 425–429. https://doi.org/10.1038/s41586-020-2488-1

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset lavezzo2020suppression.

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Lee, C.-C., Chiu, C.-H., Lee, H.-Y., Tsai, C.-N., Chen, C.-L., & Chen, S.-Y. (2022). Clinical and virological characteristics of viral shedding in children with norovirus gastroenteritis. Journal of Microbiology, Immunology and Infection, 55(6), 1188–1194. https://doi.org/10.1016/j.jmii.2021.10.006

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset lee2022clinical.

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Lee, M., Choi, C.-H., Kim, J.-W., Sim, G., Lee, S. E., Shin, H., Lee, J. h., Choi, M.-M., Yi, H., & Chung, Y.-S. (2024). Prolonged viral shedding in an immunocompromised Korean patient infected with hMPXV, sub‐lineage B.1.3, with acquired drug resistant mutations during tecovirimat treatment. Journal of Medical Virology, 96(3). Portico. https://doi.org/10.1002/jmv.29536

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset lee2024prolonged.

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Lescure, F.-X., Bouadma, L., Nguyen, D., Parisey, M., Wicky, P.-H., Behillil, S., Gaymard, A., Bouscambert-Duchamp, M., Donati, F., Le Hingrat, Q., Enouf, V., Houhou-Fidouh, N., Valette, M., Mailles, A., Lucet, J.-C., Mentre, F., Duval, X., Descamps, D., Malvy, D., et al. (2020). Clinical and virological data of the first cases of COVID-19 in Europe: a case series. The Lancet Infectious Diseases, 20(6), 697–706. https://doi.org/10.1016/s1473-3099(20)30200-0

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset lescure2020clinical.

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Li, J.-s., Cao, B., Gao, H.-c., Li, D.-d., Lin, L., LI, L.-l., Liu, N., & Duan, Z.-J. (2018). Faecal shedding of rotavirus vaccine in Chinese children after vaccination with Lanzhou lamb rotavirus vaccine. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-19469-w

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset li2018faecal.

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Limonta, S., Lapadula, G., Mezzadri, L., Corsico, L., Rovida, F., Ranzani, A., Baldanti, F., & Bonfanti, P. (2024). Mpox Virus in the Pharynx of Men Having Sex with Men: A Case Series. Pathogens, 13(1), 92. https://doi.org/10.3390/pathogens13010092

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset limonta2024mpox.

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Lion, T. (2014). Adenovirus Infections in Immunocompetent and Immunocompromised Patients. Clinical Microbiology Reviews, 27(3), 441–462. https://doi.org/10.1128/cmr.00116-13

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset lion2014adenovirus.

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Liu, P., Sablon, O., Wang, Y., Hilton, S. P., Khalil, L., Ingersoll, J. M., Truell, J., Edupuganti, S., Alaaeddine, G., Naji, A., Monarrez, E., Wolfe, M., Rouphael, N., Kraft, C., & Moe, C. L. (2024). Longitudinal fecal shedding of SARS-CoV-2, pepper mild mottle virus, and human mitochondrial DNA in COVID-19 patients. Frontiers in Medicine, 11. https://doi.org/10.3389/fmed.2024.1417967

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset liu2024longitudinal.

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Liu, L.-T., Chen, C.-J., Lin, P.-C., Lin, S.-Y., Chen, P.-C., Chen, C.-H., Tsai, C.-Y., Lin, Y.-C., & Tsai, J.-J. (2026). Diagnostic performance of a field-deployable iiPCR platform and viral load dynamics of MPXV Clade IIb in a cohort with high prevalence of HIV. Annals of Medicine, 58(1). https://doi.org/10.1080/07853890.2026.2705009

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset liu2026diagnostic.

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Loconsole, D., Sallustio, A., Centrone, F., Casulli, D., Accogli, M., Saracino, A., Foti, C., Grandolfo, M., Buccoliero, G. B., Vitale, V., De Nitto, S., Conversano, M., Desiante, F., Del Sambro, L., Simone, D., Parisi, A., Prato, R., Martinelli, D., & Chironna, M. (2022). Monkeypox Virus Infections in Southern Italy: Is There a Risk for Community Spread? International Journal of Environmental Research and Public Health, 19(18), 11719. https://doi.org/10.3390/ijerph191811719

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset loconsole2022monkeypox.

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Lucini, C., Azie, N., Roy, S., Tutill, H., Williams, R., Breuer, J., Preuner, S., Grösslinger, L., & Lion, T. (2026). Dose-dependent efficacy of intravenous brincidofovir across adenovirus species in immunocompromised patients. Journal of Infection, 93(3), 106835. https://doi.org/10.1016/j.jinf.2026.106835

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset lucini2026dose.

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Ludwig, A., Adams, O., Laws, H.-J., Schroten, H., & Tenenbaum, T. (2008). Quantitative detection of norovirus excretion in pediatric patients with cancer and prolonged gastroenteritis and shedding of norovirus. Journal of Medical Virology, 80(8), 1461–1467. Portico. https://doi.org/10.1002/jmv.21217

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset ludwig2008quantitative.

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Lui, G., Ling, L., Lai, C. K., Tso, E. Y., Fung, K. S., Chan, V., Ho, T. H., Luk, F., Chen, Z., Ng, J. K., Chow, K.-m., Cheng, P. K., Chan, R. C., Tsang, D. N., Gomersall, C. D., Hui, D. S., & Chan, P. K. (2020). Viral dynamics of SARS-CoV-2 across a spectrum of disease severity in COVID-19. Journal of Infection, 81(2), 318–356. https://doi.org/10.1016/j.jinf.2020.04.014

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset lui2020viral.

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Mackiewicz, V., Dussaix, E., Le Petitcorps, M.-F., & Roque-Afonso, A. M. (2004). Detection of Hepatitis A Virus RNA in Saliva. Journal of Clinical Microbiology, 42(9), 4329–4331. https://doi.org/10.1128/jcm.42.9.4329-4331.2004

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset mackiewicz2004detection.

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Martin, Emily T., Fairchok, Mary P., Kuypers, J., Magaret, A., Zerr, Danielle M., Wald, A., & Englund, Janet A. (2010). Frequent and Prolonged Shedding of Bocavirus in Young Children Attending Daycare. The Journal of Infectious Diseases, 201(11), 1625–1632. https://doi.org/10.1086/652405

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset martin2010frequent.

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Matsuzaki, Y., Takashita, E., Fujisaki, S., Nakauchi, M., Ohmiya, S., Onuma, R., Katsushima, Y., Katsushima, F., & Nishimura, H. (2025). Clinical Impact of Co-pathogens in Children Infected With Influenza C Virus Based on Viral Load in Clinical Specimens. Pediatric Infectious Disease Journal, 44(11), 1038–1043. https://doi.org/10.1097/inf.0000000000004897

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset matsuzaki2025clinical.

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Mattner, F., Sykora, K.-W., Meissner, B., & Heim, A. (2008). An Adenovirus Type F41 Outbreak in a Pediatric Bone Marrow Transplant Unit. Pediatric Infectious Disease Journal, 27(5), 419–424. https://doi.org/10.1097/inf.0b013e3181658c46

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset mattner2008adenovirus.

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Mertes, H., Rezende, A. M., Brosius, I., Naesens, R., Michiels, J., deBlock, T., Coppens, J., Van Dijck, C., Bomans, P., Bottieau, E., Van Esbroeck, M., Ariën, K. K., Liesenborghs, L., & Vercauteren, K. (2023). Tecovirimat Resistance in an Immunocompromised Patient With Mpox and Prolonged Viral Shedding. Annals of Internal Medicine, 176(8), 1141–1143. https://doi.org/10.7326/l23-0131

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset mertes2023tecovirimat.

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Mijatovic-Rustempasic, S., Immergluck, L. C., Parker, T. C., Laghaie, E., Mohammed, A., McFadden, T., Parashar, U. D., Bowen, M. D., & Cortese, M. M. (2017). Shedding of porcine circovirus type 1 DNA and rotavirus RNA by infants vaccinated with Rotarix®. Human Vaccines &Amp; Immunotherapeutics, 13(4), 928–935. https://doi.org/10.1080/21645515.2016.1255388

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset mijatovicrustempasic2017shedding.

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Mileto, D., Riva, A., Cutrera, M., Moschese, D., Mancon, A., Meroni, L., Giacomelli, A., Bestetti, G., Rizzardini, G., Gismondo, M. R., & Antinori, S. (2022). New challenges in human monkeypox outside Africa: A review and case report from Italy. Travel Medicine and Infectious Disease, 49, 102386. https://doi.org/10.1016/j.tmaid.2022.102386

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset mileto2022new.

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Mitsios, A., Florou, Z., Dastiridou, A., Pavlaki, M., & Androudi, S. (2024). Monkeypox-related ophthalmic disease (MPXROD): Monitoring the antiviral effect of tecovirimat with monkeypox virus detection in tear samples. European Journal of Ophthalmology, 34(6). https://doi.org/10.1177/11206721241272199

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset mitsios2024monkeypox.

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Miura, H., Kawamura, Y., Sugata, K., Koshiyama, N., Yoshikawa, A., Komoto, S., Taniguchi, K., Ihira, M., & Yoshikawa, T. (2016). Rotavirus vaccine strain transmission by vaccinated infants in the foster home. Journal of Medical Virology, 89(1), 79–84. Portico. https://doi.org/10.1002/jmv.24613

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset miura2017rotavirus.

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Miyoshi, T., Uchino, K., Yoshida, H., Motomura, K., Takeda, N., Matsuura, Y., & Tanaka, T. (2015). Long‐term viral shedding and viral genome mutation in norovirus infection. Journal of Medical Virology, 87(11), 1872–1880. Portico. https://doi.org/10.1002/jmv.24242

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset miyoshi2015long.

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Moschese, D., Pozza, G., Mileto, D., Giacomelli, A., Cutrera, M., Cossu, M. V., Matone, M., Beltrami, M., Salari, F., Antinori, S., Lombardi, A., & Rizzardini, G. (2022). Isolation of viable monkeypox virus from anal and urethral swabs, Italy, May to July 2022. Eurosurveillance, 27(36). https://doi.org/10.2807/1560-7917.es.2022.27.36.2200675

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset moschese2022isolation.

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Natarajan, A., Zlitni, S., Brooks, E. F., Vance, S. E., Dahlen, A., Hedlin, H., Park, R. M., Han, A., Schmidtke, D. T., Verma, R., Jacobson, K. B., Parsonnet, J., Bonilla, H. F., Singh, U., Pinsky, B. A., Andrews, J. R., Jagannathan, P., & Bhatt, A. S. (2022). Gastrointestinal symptoms and fecal shedding of SARS-CoV-2 RNA suggest prolonged gastrointestinal infection. Med, 3(6), 371–387. https://doi.org/10.1016/j.medj.2022.04.001

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset natarajan2022gastrointestinal.

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Negru, A. R., Mangaloiu, D. V., Vlaicu, O., Cornovac, A., Molagic, V., Duport-Dodot, I., Tilișcan, C., Stratan, L., Marinescu, A., Cavaropol, L., Bercea, M. N., Păuna, A. M., Pițigoi, D., Aramă, V., & Aramă, S.-S. (2025). A Severe Form of Mpox Infection and the Current Epidemiological Status in Romania. Microorganisms, 13(8), 1814. https://doi.org/10.3390/microorganisms13081814

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset negru2025severe.

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Neres Silva, T., Dábilla, N., Santos Corrêa, T., de Moraes Arantes, A., & Souza, M. (2020). Sapovirus detection and quantification in fecal samples from allogeneic hematopoietic stem cell transplant recipients. VirusDisease, 31(3), 374–377. https://doi.org/10.1007/s13337-020-00583-1

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset neres2020sapovirus.

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Newman, K. L., Moe, C. L., Kirby, A. E., Flanders, W. D., Parkos, C. A., & Leon, J. S. (2016). Norovirus in symptomatic and asymptomatic individuals: cytokines and viral shedding. Clinical and Experimental Immunology, 184(3), 347–357. https://doi.org/10.1111/cei.12772

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset newman2016norovirus.

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Obara, M., Hasegawa, S., Iwai, M., Horimoto, E., Nakamura, K., Kurata, T., Saito, N., Oe, H., & Takizawa, T. (2008). Single Base Substitutions in the Capsid Region of the Norovirus Genome during Viral Shedding in Cases of Infection in Areas Where Norovirus Infection Is Endemic. Journal of Clinical Microbiology, 46(10), 3397–3403. https://doi.org/10.1128/jcm.01932-07

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset obara2008single.

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Oong, X. Y., Chook, J. B., Ng, K. T., Chow, W. Z., Chan, K. G., Hanafi, N. S., Pang, Y. K., Chan, Y. F., Kamarulzaman, A., & Tee, K. K. (2018). The role of human Metapneumovirus genetic diversity and nasopharyngeal viral load on symptom severity in adults. Virology Journal, 15(1). https://doi.org/10.1186/s12985-018-1005-8

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset oong2018role.

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Pace, R. M., King-Nakaoka, E. A., Morse, A. G., Pascoe, K. J., Winquist, A., Caffé, B., Navarrete, A. D., Lackey, K. A., Pace, C. D. W., Fehrenkamp, B. D., Smith, C. B., Martin, M. A., Barbosa-Leiker, C., Ley, S. H., McGuire, M. A., Meehan, C. L., Williams, J. E., & McGuire, M. K. (2024). Prevalence and duration of SARS-CoV-2 fecal shedding in breastfeeding dyads following maternal COVID-19 diagnosis. Frontiers in Immunology, 15. https://doi.org/10.3389/fimmu.2024.1329092

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset pace2024prevalence.

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Peiris, J., Chu, C., Cheng, V., Chan, K., Hung, I., Poon, L., Law, K., Tang, B., Hon, T., Chan, C., Chan, K., Ng, J., Zheng, B., Ng, W., Lai, R., Guan, Y., & Yuen, K. (2003). Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study. The Lancet, 361(9371), 1767–1772. https://doi.org/10.1016/s0140-6736(03)13412-5

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset peiris2003clinical.

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Peiró-Mestres, A., Fuertes, I., Camprubí-Ferrer, D., Marcos, M. Á., Vilella, A., Navarro, M., Rodriguez-Elena, L., Riera, J., Català, A., Martínez, M. J., Blanco, J. L., & . (2022). Frequent detection of monkeypox virus DNA in saliva, semen, and other clinical samples from 12 patients, Barcelona, Spain, May to June 2022. Eurosurveillance, 27(28). https://doi.org/10.2807/1560-7917.es.2022.27.28.2200503

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset peiromestres2022frequent.

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Pereira, L. A., Lapinscki, B. A., Debur, M. C., Santos, J. S., Petterle, R. R., Nogueira, M. B., Vidal, L. R. R., De Almeida, S. M., & Raboni, S. M. (2022). Standardization of a high-performance RT-qPCR for viral load absolute quantification of influenza A. Journal of Virological Methods, 301, 114439. https://doi.org/10.1016/j.jviromet.2021.114439

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset pereira2022standardization.

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Pesonel, E., Laouénan, C., Guiraud, L., Bourner, J., Hoffmann, I., Molino, D., Tardivon, C., Bachelet, D., Mentré, F., Amstutz, A., Merson, L., Rojek, A., Cervantes Gonzalez, M., Antinori, A., Castagna, A., Nozza, S., Pourcher, V., Libois, A., Dunning, J., et al. (2025). Clinical Characterization and Outcomes of Human Clade IIb Mpox Virus Disease: A European Multicenter Mpox Observational Cohort Study (MOSAIC). Clinical Infectious Diseases, 80(5), 1060–1073. https://doi.org/10.1093/cid/ciae657

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset pesonel2025clinical.

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Piccirilli, G., Rocca, A., Borgatti, E. C., Gabrielli, L., Zama, D., Pierantoni, L., Leone, M., Totaro, C., Pavoni, M., Lazzarotto, T., & Lanari, M. (2023). Respiratory Syncytial Virus-Load Kinetics and Clinical Course of Acute Bronchiolitis in Hospitalized Infants: Interim Results and Review of the Literature. Pathogens, 12(5), 645. https://doi.org/10.3390/pathogens12050645

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset piccirilli2023respiratory.

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Pietsch, C., & Liebert, U. G. (2019). Intrahost viral evolution during chronic sapovirus infections. Journal of Clinical Virology, 113, 1–7. https://doi.org/10.1016/j.jcv.2019.02.001

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset pietsch2019intrahost.

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Piralla, A., Gozalo-Margüello, M., Fiorina, L., Rovida, F., Muzzi, A., Colombo, A. A., Alessandrino, P. E., & Baldanti, F. (2013). Different drug-resistant influenza A(H3N2) variants in two immunocompromised patients treated with oseltamivir during the 2011–2012 influenza season in Italy. Journal of Clinical Virology, 58(1), 132–137. https://doi.org/10.1016/j.jcv.2013.06.003

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset piralla2013different.

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Pombubpa, K., & Kittigul, L. (2012). Assessment of a rapid immunochromatographic test for the diagnosis of norovirus gastroenteritis. European Journal of Clinical Microbiology &Amp; Infectious Diseases, 31(9), 2379–2383. https://doi.org/10.1007/s10096-012-1579-9

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset pombubpa2012assessment.

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Portes, S. A. R., Volotão, E. d. M., Rocha, M. S., Rebelo, M. C., Xavier, M. d. P. T. P., Assis, R. M. d., Rose, T. L., Miagostovich, M. P., Leite, J. P. G., & Carvalho-Costa, F. A. (2016). A non-enteric adenovirus A12 gastroenteritis outbreak in Rio de Janeiro, Brazil. Memórias Do Instituto Oswaldo Cruz, 111(6), 403–406. https://doi.org/10.1590/0074-02760160030

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset portes2016non.

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Prachayangprecha, S., Schapendonk, C. M. E., Koopmans, M. P., Osterhaus, A. D. M. E., Schürch, A. C., Pas, S. D., van der Eijk, A. A., Poovorawan, Y., Haagmans, B. L., & Smits, S. L. (2014). Exploring the Potential of Next-Generation Sequencing in Detection of Respiratory Viruses. Journal of Clinical Microbiology, 52(10), 3722–3730. https://doi.org/10.1128/jcm.01641-14

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset prachayangprecha2014exploring.

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Relhan, V., Sahay, R. R., Shete, A. M., Yadav, P. D., Sahoo, B., Patil, D. Y., Kumar, S., Premachandran Syamaladevi, K. S., Dar, L., Mohandas, S., & Abraham, P. (2022). Clinical presentation, viral kinetics, and management of human monkeypox cases from New Delhi, India 2022. Journal of Medical Virology, 95(1). Portico. https://doi.org/10.1002/jmv.28249

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset relhan2023clinical.

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Rodrigues Guimarães Alves, V., Perosa, A. H., de Souza Luna, L. K., Cruz, J. S., Conte, D. D., & Bellei, N. (2020). Influenza A(H1N1)pdm09 infection and viral load analysis in patients with different clinical presentations. Memórias Do Instituto Oswaldo Cruz, 115. https://doi.org/10.1590/0074-02760200009

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset rodrigues2020influenza.

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Rouphael, N., Tanios, R., Traenkner, J., Pauly, M. D., Shetty, N., Shephard, M. J., Campbell, A., Radi, C., Danzy, S., Pan, J., Catchpole, A. P., Mann, A., Detelich, J. F., Lowen, A. C., Marr, L. C., & Lakdawala, S. S. (2025). Effective Aerosol Inoculation of Dose-Escalated Seasonal Influenza H3N2 Virus in Controlled Human Infection Model. https://doi.org/10.1101/2025.07.23.25332064

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset rouphael2025effective.

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Salvatore, P. P., Dawson, P., Wadhwa, A., Rabold, E. M., Buono, S., Dietrich, E. A., Reses, H. E., Vuong, J., Pawloski, L., Dasu, T., Bhattacharyya, S., Pevzner, E., Hall, A. J., Tate, J. E., & Kirking, H. L. (2020). Epidemiological Correlates of Polymerase Chain Reaction Cycle Threshold Values in the Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Clinical Infectious Diseases, 72(11), e761–e767. https://doi.org/10.1093/cid/ciaa1469

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset salvatore2020epidemiological.

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SARASINI, A., PERCIVALLE, E., ROVIDA, F., CAMPANINI, G., GENINI, E., TORSELLINI, M., PAOLUCCI, S., BALDANTI, F., MARCHI, A., & GRAZIAREVELLO, M. (2006). Detection and pathogenicity of human metapneumovirus respiratory infection in pediatric Italian patients during a winter–spring season. Journal of Clinical Virology, 35(1), 59–68. https://doi.org/10.1016/j.jcv.2005.05.010

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset sarasini2006detection.

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Schumer, C., Mann, A. J., Fourati, S., Lukas, P., Graw, F., Catchpole, A., & Guedj, J. (2026). Viral Dynamics of the Respiratory Syncytial Virus During Experimental Human Challenge: Implication for Transmission and Protection. The Journal of Infectious Diseases. https://doi.org/10.1093/infdis/jiag206

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset schumer2026viral.

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Schuurmans, M. M., Isenring, B. D., Jungo, C., Boeni, J., Mueller, N. J., Kohler, M., & Benden, C. (2014). Clinical features and outcomes of influenza infections in lung transplant recipients: a single‐season cohort study. Transplant Infectious Disease, 16(3), 430–439. Portico. https://doi.org/10.1111/tid.12228

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset schuurmans2014clinical.

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Seah, I. Y. J., Anderson, D. E., Kang, A. E. Z., Wang, L., Rao, P., Young, B. E., Lye, D. C., & Agrawal, R. (2020). Assessing Viral Shedding and Infectivity of Tears in Coronavirus Disease 2019 (COVID-19) Patients. Ophthalmology, 127(7), 977–979. https://doi.org/10.1016/j.ophtha.2020.03.026

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset seah2020assessing.

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Shetty, N., Shephard, M. J., Rockey, N. C., Macenczak, H., Traenkner, J., Danzy, S., Vargas-Maldonado, N., Arts, P. J., Le Sage, V., Anderson, E. J., Lyon, G. M., Fitts, E. C., Gulick, D. A., Mehta, A. K., El-Chami, M. F., Kraft, C. S., Wigginton, K. R., Lowen, A. C., Marr, L. C., et al. (2024). Influenza virus infection and aerosol shedding kinetics in a controlled human infection model. Journal of Virology, 98(12). https://doi.org/10.1128/jvi.01612-24

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset shetty2024influenza.

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Shrestha, N. K., Marco Canosa, F., Nowacki, A. S., Procop, G. W., Vogel, S., Fraser, T. G., Erzurum, S. C., Terpeluk, P., & Gordon, S. M. (2020). Distribution of Transmission Potential During Nonsevere COVID-19 Illness. Clinical Infectious Diseases, 71(11), 2927–2932. https://doi.org/10.1093/cid/ciaa886

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset shrestha2020distribution.

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Suñer, C., Ubals, M., Tarín-Vicente, E. J., Mendoza, A., Alemany, A., Hernández-Rodríguez, Á., Casañ, C., Descalzo, V., Ouchi, D., Marc, A., Rivero, À., Coll, P., Oller, X., Miguel Cabrera, J., Vall-Mayans, M., Dolores Folgueira, M., Ángeles Melendez, M., Agud-Dios, M., Gil-Cruz, E., et al. (2023). Viral dynamics in patients with monkeypox infection: a prospective cohort study in Spain. The Lancet Infectious Diseases, 23(4), 445–453. https://doi.org/10.1016/s1473-3099(22)00794-0

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset suner2023viral.

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Tabatabai, J., Fakhiri, J., Meyburg, J., Linse, K.-P., Xu, M., Söderlund-Venermo, M., Grimm, D., & Schnitzler, P. (2019). Severe Human Bocavirus 1 Respiratory Tract Infection in an Immunodeficient Child With Fatal Outcome. Pediatric Infectious Disease Journal, 38(9), e219–e222. https://doi.org/10.1097/inf.0000000000002354

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset tabatabai2019severe.

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Takanashi, S., Wang, Q., Chen, N., Shen, Q., Jung, K., Zhang, Z., Yokoyama, M., Lindesmith, L. C., Baric, R. S., & Saif, L. J. (2011). Characterization of Emerging GII.g/GII.12 Noroviruses from a Gastroenteritis Outbreak in the United States in 2010. Journal of Clinical Microbiology, 49(9), 3234–3244. https://doi.org/10.1128/jcm.00305-11

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset takanashi2011characterization.

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Tan, A. T., Linster, M., Tan, C. W., Le Bert, N., Chia, W. N., Kunasegaran, K., Zhuang, Y., Tham, C. Y. L., Chia, A., Smith, G. J. D., Young, B., Kalimuddin, S., Low, J. G. H., Lye, D., Wang, L.-F., & Bertoletti, A. (2021). Early induction of functional SARS-CoV-2-specific T cells associates with rapid viral clearance and mild disease in COVID-19 patients. Cell Reports, 34(6), 108728. https://doi.org/10.1016/j.celrep.2021.108728

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset tan2021early.

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Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset team2020clinical.

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TEUNIS, P. F. M., SUKHRIE, F. H. A., VENNEMA, H., BOGERMAN, J., BEERSMA, M. F. C., & KOOPMANS, M. P. G. (2014). Shedding of norovirus in symptomatic and asymptomatic infections. Epidemiology and Infection, 143(8), 1710–1717. https://doi.org/10.1017/s095026881400274x

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset teunis2015shedding.

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Tjon, G. M. S., Coutinho, R. A., van den Hoek, A., Esman, S., Wijkmans, C. J., Hoebe, C. J. P. A., Wolters, B., Swaan, C., Geskus, R. B., Dukers, N., & Bruisten, S. M. (2006). High and persistent excretion of hepatitis A virus in immunocompetent patients. Journal of Medical Virology, 78(11), 1398–1405. https://doi.org/10.1002/jmv.20711

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset tjon2006high.

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Tsang, T. K., Fang, V. J., Chan, K.-H., Ip, D. K. M., Leung, G. M., Peiris, J. S. M., Cowling, B. J., & Cauchemez, S. (2016). Individual Correlates of Infectivity of Influenza A Virus Infections in Households. Plos One, 11(5), e0154418. https://doi.org/10.1371/journal.pone.0154418

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset tsang2016individual.

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Tu, E. T.-V., Bull, R. A., Kim, M.-J., McIver, C. J., Heron, L., Rawlinson, W. D., & White, P. A. (2008). Norovirus Excretion in an Aged-Care Setting. Journal of Clinical Microbiology, 46(6), 2119–2121. https://doi.org/10.1128/jcm.02198-07

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset tu2008norovirus.

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Vetter, P., Eberhardt, C. S., Meyer, B., Martinez Murillo, P. A., Torriani, G., Pigny, F., Lemeille, S., Cordey, S., Laubscher, F., Vu, D.-L., Calame, A., Schibler, M., Jacquerioz, F., Blanchard-Rohner, G., Siegrist, C.-A., Kaiser, L., Didierlaurent, A. M., & Eckerle, I. (2020). Daily Viral Kinetics and Innate and Adaptive Immune Response Assessment in COVID-19: a Case Series. mSphere, 5(6). https://doi.org/10.1128/msphere.00827-20

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset vetter2020daily.

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Walsh, E. E., Peterson, D. R., Kalkanoglu, A. E., Lee, F. E.-H., & Falsey, A. R. (2013). Viral Shedding and Immune Responses to Respiratory Syncytial Virus Infection in Older Adults. The Journal of Infectious Diseases, 207(9), 1424–1432. https://doi.org/10.1093/infdis/jit038

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset walsh2013viral.

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Wang, X., Zheng, J., Guo, L., Yao, H., Wang, L., Xia, X., & Zhang, W. (2020). Fecal viral shedding in COVID-19 patients: Clinical significance, viral load dynamics and survival analysis. Virus Research, 289, 198147. https://doi.org/10.1016/j.virusres.2020.198147

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset wang2020fecal.

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Wang, F., Fang, Y., Zhou, Z., Liu, H., Ji, J., Jia, L., Jia, H., Zheng, L., Wang, W., Guo, C., Yuan, C., Yin, Y., Ma, J., Li, H., Chen, B., Duan, J., Huang, T., Zhang, G., Jiang, T., et al. (2026). Clinical and radiological features of severe mpox: a case series of 16 patients in Beijing, China. BMC Infectious Diseases, 26(1). https://doi.org/10.1186/s12879-026-12626-x

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset wang2026clinical.

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Wölfel, R., Corman, V. M., Guggemos, W., Seilmaier, M., Zange, S., Müller, M. A., Niemeyer, D., Jones, T. C., Vollmar, P., Rothe, C., Hoelscher, M., Bleicker, T., Brünink, S., Schneider, J., Ehmann, R., Zwirglmaier, K., Drosten, C., & Wendtner, C. (2020). Virological assessment of hospitalized patients with COVID-2019. Nature, 581(7809), 465–469. https://doi.org/10.1038/s41586-020-2196-x

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset woelfel2020virological.

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Woo, P. C. Y., Lau, S. K. P., Chu, C.-m., Chan, K.-h., Tsoi, H.-w., Huang, Y., Wong, B. H. L., Poon, R. W. S., Cai, J. J., Luk, W.-k., Poon, L. L. M., Wong, S. S. Y., Guan, Y., Peiris, J. S. M., & Yuen, K.-y. (2005). Characterization and Complete Genome Sequence of a Novel Coronavirus, Coronavirus HKU1, from Patients with Pneumonia. Journal of Virology, 79(2), 884–895. https://doi.org/10.1128/jvi.79.2.884-895.2005

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset woo2005characterization.

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Xing, Y.-H., Ni, W., Wu, Q., Li, W.-J., Li, G.-J., Wang, W.-D., Tong, J.-N., Song, X.-F., Wing-Kin Wong, G., & Xing, Q.-S. (2020). Prolonged viral shedding in feces of pediatric patients with coronavirus disease 2019. Journal of Microbiology, Immunology and Infection, 53(3), 473–480. https://doi.org/10.1016/j.jmii.2020.03.021

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset xing2020prolonged.

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Xu, Y., Li, X., Zhu, B., Liang, H., Fang, C., Gong, Y., Guo, Q., Sun, X., Zhao, D., Shen, J., Zhang, H., Liu, H., Xia, H., Tang, J., Zhang, K., & Gong, S. (2020). Characteristics of pediatric SARS-CoV-2 infection and potential evidence for persistent fecal viral shedding. Nature Medicine, 26(4), 502–505. https://doi.org/10.1038/s41591-020-0817-4

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset xu2020characteristics.

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Yang, Y., Yang, M., Yuan, J., Wang, F., Wang, Z., Li, J., Zhang, M., Xing, L., Wei, J., Peng, L., Wong, G., Zheng, H., Wu, W., Shen, C., Liao, M., Feng, K., Li, J., Yang, Q., Zhao, J., et al. (2020). Laboratory Diagnosis and Monitoring the Viral Shedding of SARS-CoV-2 Infection. The Innovation, 1(3), 100061. https://doi.org/10.1016/j.xinn.2020.100061

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset yang2020laboratory.

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Yang, S., Xia, C., Zhang, Y., Shen, Y., Xia, C., Lu, Y., Su, S., Deng, C., Harypursat, V., Wang, J., Yuan, J., & Chen, Y. (2024). Clinical features and viral load variations of Mpox: a retrospective study in Chongqing, China. BMC Infectious Diseases, 24(1). https://doi.org/10.1186/s12879-024-09537-0

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset yang2024clinical.

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Yen, C., Jakob, K., Esona, M. D., Peckham, X., Rausch, J., Hull, J. J., Whittier, S., Gentsch, J. R., & LaRussa, P. (2011). Detection of fecal shedding of rotavirus vaccine in infants following their first dose of pentavalent rotavirus vaccine. Vaccine, 29(24), 4151–4155. https://doi.org/10.1016/j.vaccine.2011.03.074

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset yen2011detection.

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Yilmaz, A., Marklund, E., Andersson, M., Nilsson, S., Andersson, L.-M., Lindh, M., & Gisslén, M. (2020). Upper Respiratory Tract Levels of Severe Acute Respiratory Syndrome Coronavirus 2 RNA and Duration of Viral RNA Shedding Do Not Differ Between Patients With Mild and Severe/Critical Coronavirus Disease 2019. The Journal of Infectious Diseases, 223(1), 15–18. https://doi.org/10.1093/infdis/jiaa632

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset yilmaz2020upper.

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Zheng, L.-s., Yuan, X.-h., Xie, Z.-p., Jin, Y., Gao, H.-c., Song, J.-r., Zhang, R.-f., Xu, Z.-q., Hou, Y.-d., & Duan, Z.-j. (2009). Human bocavirus infection in young children with acute respiratory tract infection in Lanzhou, China. Journal of Medical Virology, 82(2), 282–288. Portico. https://doi.org/10.1002/jmv.21689

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Zhou, L., Zheng, S., Xiao, Q., Ren, L., Xie, X., Luo, J., Wang, L., Huang, A., Liu, W., & Liu, E. (2014). Single detection of human bocavirus 1 with a high viral load in severe respiratory tract infections in previously healthy children. BMC Infectious Diseases, 14(1). https://doi.org/10.1186/1471-2334-14-424

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset zhou2014single.

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Zuo, T., Zhang, F., Lui, G. C. Y., Yeoh, Y. K., Li, A. Y. L., Zhan, H., Wan, Y., Chung, A. C. K., Cheung, C. P., Chen, N., Lai, C. K. C., Chen, Z., Tso, E. Y. K., Fung, K. S. C., Chan, V., Ling, L., Joynt, G., Hui, D. S. C., Chan, F. K. L., et al. (2020). Alterations in Gut Microbiota of Patients With COVID-19 During Time of Hospitalization. Gastroenterology, 159(3), 944–955. https://doi.org/10.1053/j.gastro.2020.05.048

Wang, Y., Hoffmann, T., Xiao, W., Hu, Y., Chen, Z., Zhang, H., Shen, L., & Zhai, S. (2026). Shedding Hub (Version v1.0.2) [Computer software]. Zenodo. https://doi.org/10.5281/ZENODO.15052772 Dataset zuo2020alterations.