Densely sampled viral trajectories suggest longer duration of acute infection with B.1.1.7 variant relative to non-B.1.1.7 SARS-CoV-2 kissler2021densely
This study analyzed densely sampled longitudinal RT-qPCR data from 65 individuals infected with SARS-CoV-2, including 7 infected with the B.1.1.7 (Alpha) variant, using each person’s lowest Ct value as the reference event time point. Inclusion criteria required each individual to have at least 5 positive PCR tests (Ct < 40), including at least one with Ct < 35. Ct value were collected using the Roche cobas target 1 assay and converted to estimated RNA viral concentrations via a standard curve and log-linear transformation.
Analytes
AN_OPS_SARSCoV2
SARS-CoV-2 RNA gene copy concentration in combined anterior nares and oropharyngeal swabs. The concentration was quantified in gene copies per milliliter.
Biomarker: SARS-CoV-2
Specimen:
anterior nares swab and oropharyngeal swab
Units: cycle threshold
Gene target: ORF1
Participants: 65
Negative samples: 3159
Positive samples (not quantifiable): 0
Quantifiable samples: 723
Limit of quantification: unknown
Limit of detection: 40