Datasets

Efficacy and viral dynamics of tecovirimat in patients with MPOX: A multicenter open-label, double-arm trial in Japan

akiyama2024efficacy

19 participants 491 measurements

mpox

Laboratory validation and clinical performance of a saliva-based test for monkeypox virus

allanblitz2023laboratory

40 participants 58 measurements

mpox

Clinical characteristics of pediatric SARS-CoV-2 infection and coronavirus disease 2019 (COVID-19) in Kuwait

alsharrah2020clinical

29 participants 75 measurements

SARS-CoV-2

Detection of Norovirus in Saliva Samples from Acute Gastroenteritis Cases and Asymptomatic Subjects: Association with Age and Higher Shedding in Stool

anfrunsestrada2020detection

8 participants 8 measurements

norovirus

Epidemiological, clinical and virological characteristics of four cases of monkeypox support transmission through sexual contact, Italy, May 2022

antinori2022epidemiological

4 participants 24 measurements

mpox

Duration of norovirus excretion and the longitudinal course of viral load in norovirus-infected elderly patients

aoki2010duration

13 participants 57 measurements

norovirus

Longitudinal and quantitative fecal shedding dynamics of SARS-CoV-2, pepper mild mottle virus, and crAssphage

arts2023longitudinal

48 participants 1502 measurements

SARS-CoV-2 PMMoV crAssphage

Norwalk virus shedding after experimental human infection

atmar2008norwalk

16 participants 182 measurements

norovirus

Influenza and respiratory syncytial virus screening for the detection of asymptomatically infected patients in hematology and oncology

baier2018influenza

6 participants 20 measurements

influenza RSV

Adenovirus infections in Bordeaux University Hospital 2008-2010: clinical and virological features

berciaud2012adenovirus

4 participants 27 measurements

adenovirus

Rapid quantification and differentiation of human polyomavirus DNA in undiluted urine from patients after bone marrow transplantation

biel2000rapid

4 participants 55 measurements

BK polyomavirus

Human bocavirus infection in children with respiratory tract disease

brieu2008human

6 participants 13 measurements

bocavirus

Prolonged viral replication and longitudinal viral dynamic differences among respiratory syncytial virus infected infants

brint2017prolonged

25 participants 212 measurements

RSV

Presymptomatic viral shedding in high-risk mpox contacts: A prospective cohort study

brosius2023presymptomatic

12 participants 490 measurements

mpox

Rotavirus A shedding and HBGA host genetic susceptibility in a birth community-cohort, Rio de Janeiro, Brazil, 2014-2018

cantelli2020rotavirus

46 participants 50 measurements

rotavirus vaccine

Molecular epidemiology of human metapneumovirus in Ireland

carr2008molecular

30 participants 30 measurements

metapneumovirus

Centers for Disease Control and Prevention (CDC) Nursing Home Public Health Response Network (NHPHRN)

cdc2024nhphrn

84 participants 2758 measurements

SARS-CoV-2

Clinical manifestations and viral kinetics of people with Mpox: A case series during the 2023 outbreak in Taiwan

chen2024clinical

14 participants 242 measurements

mpox

Human Bocavirus in Children Hospitalized for Acute Gastroenteritis: A Case-Control Study

cheng2008human

18 participants 18 measurements

bocavirus

A pilot study on use of live attenuated rotavirus vaccine (Rotarix™) as an infection challenge model

chilengi2020pilot

21 participants 48 measurements

rotavirus

Development of real-time PCR assays for detection and quantification of human bocavirus

choi2008development

11 participants 11 measurements

bocavirus

Kinetics of viral DNA in body fluids and antibody response in patients with acute Monkeypox virus infection

colavita2023kinetics

3 participants 173 measurements

mpox

Temporal dynamics of RSV shedding and genetic diversity in adults during the COVID-19 pandemic in a French hospital, early 2021

coppee2023temporal

8 participants 33 measurements

RSV

Alternative sampling specimens for the molecular detection of mpox (formerly monkeypox) virus

coppens2023alternative

25 participants 75 measurements

mpox

Clinical and virologic characteristics of the first 12 patients with coronavirus disease 2019 (COVID-19) in the United States

covid2020clinical

12 participants 442 measurements

SARS-CoV-2

Rotavirus shedding following administration of RV3-BB human neonatal rotavirus vaccine

cowley2017rotavirus

16 participants 239 measurements

rotavirus vaccine

Fatal outcome of human influenza A (H5N1) is associated with high viral load and hypercytokinemia

de2006fatal

2 participants 22 measurements

influenza

Retrospective detection of asymptomatic monkeypox virus infections among male sexual health clinic attendees in Belgium

de2022retrospective

4 participants 16 measurements

mpox orthopox

Safety and Antiviral Effects of Nebulized PC786 in a Respiratory Syncytial Virus Challenge Study

devincenzo2022safety

12 participants 19 measurements

RSV

Respiratory syncytial virus load, viral dynamics, and disease severity in previously healthy naturally infected children

el2011respiratory

8 participants 30 measurements

RSV

Adenovirus infection and treatment with cidofovir in children after liver transplantation

engelmann2009adenovirus

21 participants 105 measurements

adenovirus

Similarities in rotavirus vaccine viral shedding and immune responses in pairs of twins

enya2023similarities

20 participants 347 measurements

rotavirus vaccine

SARS-CoV-2 viral load is associated with increased disease severity and mortality

fajnzylber2020sars

88 participants 434 measurements

SARS-CoV-2

Comparison of quantitative reverse transcription-PCR to viral culture for assessment of respiratory syncytial virus shedding

falsey2003comparison

12 participants 168 measurements

RSV

An oral norovirus vaccine generates mucosal immunity and reduces viral shedding in a phase 2 placebo-controlled challenge study

flitter2025oral

141 participants 647 measurements

norovirus

Viral shedding and susceptibility to oseltamivir in hospitalized immunocompromised patients with influenza in the Influenza Resistance Information Study (IRIS)

fraaij2015viral

4 participants 14 measurements

influenza

Viral dynamics in transplant patients: implications for disease

funk2007viral

1 participants 5 measurements

BK polyomavirus

Infectious viral shedding of SARS-CoV-2 Delta following vaccination: A longitudinal cohort study

garciaknight2022infectious

82 participants 985 measurements

SARS-CoV-2

Monkeypox Outbreak 2022: Clinical and Virological Features of 30 Patients at the Sexually Transmitted Diseases Centre of Sant' Orsola Hospital, Bologna, Northeastern Italy

gaspari2023monkeypox

30 participants 125 measurements

mpox

Hydroxychloroquine and azithromycin as a treatment of COVID-19:results of an open-label non-randomized clinical trial

gautret2020hydroxychloroquine

19 participants 126 measurements

SARS-CoV-2

Effect of Norovirus Inoculum Dose on Virus Kinetics, Shedding, and Symptoms

ge2023effect

20 participants 464 measurements

norovirus

The human bocavirus role in acute respiratory tract infections of pediatric patients as defined by viral load quantification

gerna2007human

42 participants 114 measurements

bocavirus RSV rhinovirus parainfluenza virus adenovirus coronavirus

Prospective study of human metapneumovirus infection: diagnosis, typing and virus quantification in nasopharyngeal secretions from pediatric patients

gerna2007prospective

11 participants 26 measurements

metapneumovirus rhinovirus influenza hCoV NL63

Viral load in hospitalized infants with respiratory syncytial virus bronchiolitis: a three-way comparative analysis

golantripto2024viral

13 participants 100 measurements

RSV

Nosocomial acute gastroenteritis outbreak caused by an equine-like G3P[8] DS-1-like rotavirus and GII.4 Sydney[P16] norovirus at a pediatric hospital in Rio de Janeiro, Brazil, 2019

gutierrez2021nosocomial

9 participants 18 measurements

rotavirus norovirus

Onset and window of SARS-CoV-2 infectiousness and temporal correlation with symptom onset: a prospective, longitudinal, community cohort study

hakki2022onset

50 participants 1428 measurements

SARS-CoV-2

Sequential Analysis of Viral Load in a Neonate and Her Mother Infected With Severe Acute Respiratory Syndrome Coronavirus 2

han2020sequential

2 participants 51 measurements

SARS-CoV-2

Infectious human adenoviruses are shed in urine even after disappearance of urethral symptoms

hanaoka2019infectious

32 participants 72 measurements

adenovirus

Monitoring monkeypox virus in saliva and air samples in Spain: a cross-sectional study

hernaez2023monitoring

41 participants 82 measurements

mpox

Rotavirus Vaccination Can Be Performed Without Viral Dissemination in the Neonatal Intensive Care Unit

hiramatsu2018rotavirus

19 participants 200 measurements

rotavirus vaccine

Association between adverse clinical outcome in human disease caused by novel influenza A H7N9 virus and sustained viral shedding and emergence of antiviral resistance

hu2013association

14 participants 341 measurements

influenza

Prolonged shedding of type 55 human adenovirus in immunocompetent adults with adenoviral respiratory infections

huh2019prolonged

5 participants 26 measurements

adenovirus

Quantitative analysis of fecal sapovirus shedding: identification of nucleotide substitutions in the capsid protein during prolonged excretion

iwakiri2009quantitative

17 participants 41 measurements

sapovirus

Differentiation between Wild-Type Group A Rotaviruses and Vaccine Strains in Cases of Suspected Horizontal Transmission and Adverse Events Following Vaccination

jacobsen2022differentiation

28 participants 28 measurements

rotavirus vaccine

Estimating infectiousness throughout SARS-CoV-2 infection course

jones2021estimating

25378 participants 29712 measurements

SARS-CoV-2

Presence of enteric hepatitis viruses in the sewage and population of Greater Cairo

kamel2011presence

36 participants 36 measurements

hepatitis A virus

Real-time quantitative PCR detection of four human bocaviruses

kantola2010real

5 participants 5 measurements

bocavirus

Shedding of pandemic (H1N1) 2009 virus among health care personnel, Seattle, Washington, USA

kay2011shedding

14 participants 43 measurements

influenza

Daily Longitudinal Sampling of SARS-CoV-2 Infection Reveals Substantial Heterogeneity in Infectiousness

ke2022daily

60 participants 1699 measurements

SARS-CoV-2

Viral Load Kinetics of SARS-CoV-2 Infection in First Two Patients in Korea

kim2020viral

2 participants 170 measurements

SARS-CoV-2

Viral kinetics of SARS-CoV-2 in asymptomatic carriers and presymptomatic patients

kimse2020viral

13 participants 61 measurements

SARS-CoV-2

Disease course and viral shedding in experimental Norwalk virus and Snow Mountain virus infection

kirby2014disease

24 participants 190 measurements

norovirus

Vomiting as a Symptom and Transmission Risk in Norovirus Illness: Evidence from Human Challenge Studies

kirby2016vomiting

9 participants 77 measurements

norovirus

Densely sampled viral trajectories suggest longer duration of acute infection with B.1.1.7 variant relative to non-B.1.1.7 SARS-CoV-2

kissler2021densely

65 participants 3882 measurements

SARS-CoV-2

Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies

kissler2021viral

68 participants 4822 measurements

SARS-CoV-2

Influenza Virus Shedding in Laninamivir-Treated Children upon Returning to School

kondo2016influenza

28 participants 84 measurements

influenza

Small quantities of respiratory syncytial virus RNA only in large droplets around infants hospitalized with acute respiratory infections

kutter2021small

18 participants 58 measurements

RSV rhinovirus

Monkeypox virus isolation from a semen sample collected in the early phase of infection in a patient with prolonged seminal viral shedding

lapa2022monkeypox

1 participants 33 measurements

mpox

Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo

lavezzo2020suppression

141 participants 526 measurements

SARS-CoV-2

Clinical and virological characteristics of viral shedding in children with norovirus gastroenteritis

lee2022clinical

55 participants 64 measurements

norovirus

Prolonged viral shedding in an immunocompromised Korean patient infected with hMPXV, sub-lineage B.1.3, with acquired drug resistant mutations during tecovirimat treatment

lee2024prolonged

1 participants 19 measurements

mpox

Clinical and virological data of the first cases of COVID-19 in Europe: a case series

lescure2020clinical

5 participants 42 measurements

SARS-CoV-2

Faecal shedding of rotavirus vaccine in Chinese children after vaccination with Lanzhou lamb rotavirus vaccine

li2018faecal

16 participants 143 measurements

Lanzhou lamb rotavirus vaccine

Mpox Virus in the Pharynx of Men Having Sex with Men: A Case Series

limonta2024mpox

11 participants 53 measurements

mpox

Adenovirus infections in immunocompetent and immunocompromised patients

lion2014adenovirus

2 participants 161 measurements

adenovirus

Longitudinal Fecal Shedding of SARS-CoV-2, Pepper Mild Mottle Virus, and Human Mitochondrial DNA in COVID-19 Patients

liu2024longitudinal

42 participants 465 measurements

SARS-CoV-2 PMMoV mtDNA

Diagnostic performance of a field-deployable iiPCR platform and viral load dynamics of MPXV Clade IIb in a cohort with high prevalence of HIV

liu2026diagnostic

24 participants 84 measurements

mpox

Monkeypox Virus Infections in Southern Italy: Is There a Risk for Community Spread?

loconsole2022monkeypox

10 participants 27 measurements

mpox

Dose-dependent efficacy of intravenous brincidofovir across adenovirus species in immunocompromised patients

lucini2026dose

31 participants 279 measurements

adenovirus

Quantitative detection of norovirus excretion in pediatric patients with cancer and prolonged gastroenteritis and shedding of norovirus

ludwig2008quantitative

9 participants 80 measurements

norovirus

Viral dynamics of SARS-CoV-2 across a spectrum of disease severity in COVID-19

lui2020viral

11 participants 43 measurements

SARS-CoV-2

Detection of hepatitis A virus RNA in saliva

mackiewicz2004detection

6 participants 12 measurements

hepatitis A virus

Frequent and prolonged shedding of bocavirus in young children attending daycare

martin2010frequent

8 participants 85 measurements

bocavirus

Clinical Impact of Co-pathogens in Children Infected With Influenza C Virus Based on Viral Load in Clinical Specimens

matsuzaki2025clinical

16 participants 90 measurements

influenza adenovirus rhinovirus bocavirus parainfluenza virus RSV metapneumovirus cytomegalovirus enterovirus hCoV NL63

An adenovirus type F41 outbreak in a pediatric bone marrow transplant unit: analysis of clinical impact and preventive strategies

mattner2008adenovirus

8 participants 28 measurements

adenovirus

Tecovirimat Resistance in an Immunocompromised Patient With Mpox and Prolonged Viral Shedding

mertes2023tecovirimat

1 participants 22 measurements

mpox HIV

Shedding of porcine circovirus type 1 DNA and rotavirus RNA by infants vaccinated with Rotarix®

mijatovicrustempasic2017shedding

33 participants 537 measurements

rotavirus vaccine

New challenges in human monkeypox outside Africa: A review and case report from Italy

mileto2022new

1 participants 23 measurements

mpox

Monkeypox-related ophthalmic disease (MPXROD): Monitoring the antiviral effect of tecovirimat with monkeypox virus detection in tear samples

mitsios2024monkeypox

1 participants 8 measurements

mpox

Rotavirus vaccine strain transmission by vaccinated infants in the foster home

miura2017rotavirus

3 participants 146 measurements

rotavirus vaccine

Long-term viral shedding and viral genome mutation in norovirus infection

miyoshi2015long

4 participants 37 measurements

norovirus

Isolation of viable monkeypox virus from anal and urethral swabs, Italy, May to July 2022

moschese2022isolation

33 participants 126 measurements

mpox

Gastrointestinal symptoms and fecal shedding of SARS-CoV-2 RNA suggest prolonged gastrointestinal infection

natarajan2022gastrointestinal

113 participants 7563 measurements

SARS-CoV-2

A Severe Form of Mpox Infection and the Current Epidemiological Status in Romania

negru2025severe

1 participants 50 measurements

mpox

Sapovirus detection and quantification in fecal samples from allogeneic hematopoietic stem cell transplant recipients

neres2020sapovirus

1 participants 12 measurements

sapovirus

Norovirus in symptomatic and asymptomatic individuals: cytokines and viral shedding

newman2016norovirus

25 participants 263 measurements

norovirus

Single base substitutions in the capsid region of the norovirus genome during viral shedding in cases of infection in areas where norovirus infection is endemic

obara2008single

2 participants 11 measurements

norovirus

The role of human Metapneumovirus genetic diversity and nasopharyngeal viral load on symptom severity in adults

oong2018role

81 participants 81 measurements

metapneumovirus

Prevalence and duration of SARS-CoV-2 fecal shedding in breastfeeding dyads following maternal COVID-19 diagnosis

pace2024prevalence

64 participants 369 measurements

SARS-CoV-2

Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study

peiris2003clinical

14 participants 42 measurements

SARS

Frequent detection of monkeypox virus DNA in saliva, semen, and other clinical samples from 12 patients, Barcelona, Spain, May to June 2022

peiromestres2022frequent

12 participants 147 measurements

mpox

Standardization of a high-performance RT-qPCR for viral load absolute quantification of influenza A

pereira2022standardization

19 participants 38 measurements

influenza

Clinical Characterization and Outcomes of Human Clade IIb Mpox Virus Disease: A European Multicenter Mpox Observational Cohort Study (MOSAIC)

pesonel2025clinical

60 participants 524 measurements

mpox

Respiratory Syncytial Virus-Load Kinetics and Clinical Course of Acute Bronchiolitis in Hospitalized Infants: Interim Results and Review of the Literature

piccirilli2023respiratory

36 participants 118 measurements

RSV

Intrahost viral evolution during chronic sapovirus infections

pietsch2019intrahost

5 participants 42 measurements

sapovirus

Different drug-resistant influenza A(H3N2) variants in two immunocompromised patients treated with oseltamivir during the 2011–2012 influenza season in Italy

piralla2013different

48 participants 127 measurements

influenza

Assessment of a rapid immunochromatographic test for the diagnosis of norovirus gastroenteritis

pombubpa2012assessment

7 participants 7 measurements

norovirus

A non-enteric adenovirus A12 gastroenteritis outbreak in Rio de Janeiro, Brazil

portes2016non

9 participants 10 measurements

adenovirus

Exploring the Potential of Next-Generation Sequencing in Detection of Respiratory Viruses

prachayangprecha2014exploring

46 participants 62 measurements

rhinovirus enterovirus metapneumovirus bocavirus

Clinical presentation, viral kinetics, and management of human monkeypox cases from New Delhi, India 2022

relhan2023clinical

5 participants 151 measurements

mpox

Influenza A(H1N1)pdm09 infection and viral load analysis in patients with different clinical presentations

rodrigues2020influenza

10 participants 33 measurements

influenza

Effective Aerosol Inoculation of Dose-Escalated Seasonal Influenza H3N2 Virus in Controlled Human Infection Model

rouphael2025effective

8 participants 532 measurements

influenza

Epidemiological Correlates of Polymerase Chain Reaction Cycle Threshold Values in the Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)

salvatore2020epidemiological

93 participants 223 measurements

SARS-CoV-2

Detection and pathogenicity of human metapneumovirus respiratory infection in pediatric Italian patients during a winter–spring season

sarasini2006detection

5 participants 12 measurements

metapneumovirus

Viral dynamics of the Respiratory Syncytial Virus during experimental human challenge: insights for transmission and protection

schumer2026viral

25 participants 895 measurements

RSV

Clinical features and outcomes of influenza infections in lung transplant recipients: a single-season cohort study

schuurmans2014clinical

22 participants 60 measurements

influenza

Assessing Viral Shedding and Infectivity of Tears in Coronavirus Disease 2019 (COVID-19) Patients

seah2020assessing

17 participants 134 measurements

SARS-CoV-2

Influenza virus infection and aerosol shedding kinetics in a controlled human infection model

shetty2024influenza

8 participants 218 measurements

influenza

Distribution of Transmission Potential During Nonsevere COVID-19 Illness

shrestha2020distribution

230 participants 528 measurements

SARS-CoV-2

Viral dynamics in patients with monkeypox infection: a prospective cohort study in Spain

suner2023viral

77 participants 1660 measurements

mpox

Severe Human Bocavirus 1 Respiratory Tract Infection in an Immunodeficient Child With Fatal Outcome

tabatabai2019severe

1 participants 14 measurements

bocavirus

Characterization of emerging GII.g/GII.12 noroviruses from a gastroenteritis outbreak in the United States in 2010

takanashi2011characterization

1 participants 11 measurements

norovirus

Early induction of functional SARS-CoV-2-specific T cells associates with rapid viral clearance and mild disease in COVID-19 patients

tan2021early

12 participants 82 measurements

SARS-CoV-2

Clinical and virologic characteristics of the first 12 patients with coronavirus disease 2019 (COVID-19) in the United States

team2020clinical

12 participants 121 measurements

SARS-CoV-2

Shedding of norovirus in symptomatic and asymptomatic infections

teunis2015shedding

102 participants 450 measurements

norovirus

High and persistent excretion of hepatitis A virus in immunocompetent patients

tjon2006high

3 participants 23 measurements

hepatitis A virus

Individual Correlates of Infectivity of Influenza A Virus Infections in Households

tsang2016individual

478 participants 1154 measurements

influenza

Norovirus excretion in an aged-care setting

tu2008norovirus

59 participants 59 measurements

norovirus

Daily Viral Kinetics and Innate and Adaptive Immune Response Assessment in COVID-19: a Case Series

vetter2020daily

5 participants 74 measurements

SARS-CoV-2

Viral shedding and immune responses to respiratory syncytial virus infection in older adults

walsh2013viral

22 participants 120 measurements

RSV

Fecal viral shedding in COVID-19 patients: Clinical significance, viral load dynamics and survival analysis

wang2020fecal

11 participants 112 measurements

SARS-CoV-2

Clinical and radiological features of severe mpox: a case series of 16 patients in Beijing, China

wang2026clinical

16 participants 16 measurements

mpox

Virological assessment of hospitalized patients with COVID-2019

woelfel2020virological

9 participants 382 measurements

SARS-CoV-2

Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia

woo2005characterization

1 participants 6 measurements

CoV-HKU1

Prolonged viral shedding in feces of pediatric patients with coronavirus disease 2019

xing2020prolonged

1 participants 36 measurements

SARS-CoV-2

Characteristics of pediatric SARS-CoV-2 infection and potential evidence for persistent fecal viral shedding

xu2020characteristics

8 participants 107 measurements

SARS-CoV-2

Laboratory Diagnosis and Monitoring the Viral Shedding of SARS-CoV-2 Infection

yang2020laboratory

28 participants 361 measurements

SARS-CoV-2

Clinical features and viral load variations of Mpox: a retrospective study in Chongqing, China

yang2024clinical

9 participants 70 measurements

mpox

Detection of fecal shedding of rotavirus vaccine in infants following their first dose of pentavalent rotavirus vaccine

yen2011detection

22 participants 57 measurements

rotavirus vaccine

Upper Respiratory Tract Levels of Severe Acute Respiratory Syndrome Coronavirus 2 RNA and Duration of Viral RNA Shedding Do Not Differ Between Patients With Mild and Severe/Critical Coronavirus Disease 2019

yilmaz2020upper

54 participants 349 measurements

SARS-CoV-2

Epidemiologic Features and Clinical Course of Patients Infected With SARS-CoV-2 in Singapore

young2020epidemiologic

18 participants 216 measurements

SARS-CoV-2

SARS-CoV-2 viral shedding characteristics and potential evidence for the priority for faecal specimen testing in diagnosis

yuan2021sars

10 participants 422 measurements

SARS-CoV-2

Adenovirus viremia may predict adenovirus pneumonia severity in immunocompetent children

zhang2021adenovirus

7 participants 17 measurements

adenovirus

Human bocavirus infection in young children with acute respiratory tract infection in Lanzhou, China

zheng2010human

29 participants 29 measurements

bocavirus

Single detection of human bocavirus 1 with a high viral load in severe respiratory tract infections in previously healthy children

zhou2014single

7 participants 7 measurements

bocavirus

Alterations in Gut Microbiota of Patients With COVID-19 During Time of Hospitalization

zuo2020alterations

15 participants 52 measurements

SARS-CoV-2